LP solver set as : glpk
Set cobra solver to glpk...
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+ Creating production networks +
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Production network for: ETH
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
parent model does not contain gene information
parent model does not contain gene information
Reaction name for FEM4 not specified, usign id
Reaction name for FEM9 not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: PRO
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
Reaction name for PRO1r not specified, usign id
Warning: Metabolite LAD not in model - added to the model
Warning: Metabolite name for LAD set to LAD
Reaction name for PRO2r not specified, usign id
Warning: Metabolite P12D not in model - added to the model
Warning: Metabolite name for P12D set to P12D
Reaction name for PRO3 not specified, usign id
Warning: Metabolite PROPANAL not in model - added to the model
Warning: Metabolite name for PROPANAL set to PROPANAL
Reaction name for PRO4 not specified, usign id
Warning: Metabolite PRO not in model - added to the model
Warning: Metabolite name for PRO set to PRO
Reaction name for EX_PRO not specified, usign id
Reaction name for FEM4 not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: IPRO
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
Warning: Metabolite AACE not in model - added to the model
Warning: Metabolite name for AACE set to AACE
Warning: Metabolite ACT not in model - added to the model
Warning: Metabolite name for ACT set to ACT
Warning: Metabolite IPRO not in model - added to the model
Warning: Metabolite name for IPRO set to IPRO
Reaction name for EX_IPRO not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: BUT
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
Reaction name for BUT1 not specified, usign id
Reaction name for BUT2 not specified, usign id
Reaction name for BUT3 not specified, usign id
Reaction name for BUT4 not specified, usign id
Reaction name for BUT5 not specified, usign id
Reaction name for BUT6 not specified, usign id
Reaction name for FEM4 not specified, usign id
Reaction name for EX_BUT not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: IBUT
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
parent model does not contain gene information
parent model does not contain gene information
Reaction name for IBUT1 not specified, usign id
Warning: Metabolite ACELAC not in model - added to the model
Warning: Metabolite name for ACELAC set to ACELAC
Reaction name for IBUT2 not specified, usign id
Warning: Metabolite DHIV not in model - added to the model
Warning: Metabolite name for DHIV set to DHIV
Reaction name for IBUT3 not specified, usign id
Warning: Metabolite OIV not in model - added to the model
Warning: Metabolite name for OIV set to OIV
Reaction name for IBUT4 not specified, usign id
Warning: Metabolite IBUTANAL not in model - added to the model
Warning: Metabolite name for IBUTANAL set to IBUTANAL
Reaction name for IBUT5 not specified, usign id
Warning: Metabolite IBUT not in model - added to the model
Warning: Metabolite name for IBUT set to IBUT
Reaction name for EX_IBUT not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: ETHBUT
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
parent model does not contain gene information
Reaction name for BUT1 not specified, usign id
Reaction name for BUT2 not specified, usign id
Reaction name for BUT3 not specified, usign id
Reaction name for BUT4 not specified, usign id
Reaction name for ETHBUT1 not specified, usign id
Warning: Metabolite ETHBUT not in model - added to the model
Warning: Metabolite name for ETHBUT set to ETHBUT
Reaction name for FEM4 not specified, usign id
Reaction name for FEM9 not specified, usign id
Reaction name for EX_ETHBUT not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: PROBUT
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
Reaction name for BUT1 not specified, usign id
Reaction name for BUT2 not specified, usign id
Reaction name for BUT3 not specified, usign id
Reaction name for BUT4 not specified, usign id
Reaction name for PRO1r not specified, usign id
Warning: Metabolite LAD not in model - added to the model
Warning: Metabolite name for LAD set to LAD
Reaction name for PRO2r not specified, usign id
Warning: Metabolite P12D not in model - added to the model
Warning: Metabolite name for P12D set to P12D
Reaction name for PRO3 not specified, usign id
Warning: Metabolite PROPANAL not in model - added to the model
Warning: Metabolite name for PROPANAL set to PROPANAL
Reaction name for PRO4 not specified, usign id
Warning: Metabolite PRO not in model - added to the model
Warning: Metabolite name for PRO set to PRO
Reaction name for PROBUT1 not specified, usign id
Warning: Metabolite PROBUT not in model - added to the model
Warning: Metabolite name for PROBUT set to PROBUT
Reaction name for EX_PROBUT not specified, usign id
Reaction name for FEM4 not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: IPROBUT
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
Reaction name for BUT1 not specified, usign id
Reaction name for BUT2 not specified, usign id
Reaction name for BUT3 not specified, usign id
Reaction name for BUT4 not specified, usign id
Reaction name for IPRO1 not specified, usign id
Warning: Model already has the same reaction you tried to add: BUT1
Reaction IPRO1 was already in parent model
Reaction name for IPRO2 not specified, usign id
Warning: Metabolite AACE not in model - added to the model
Warning: Metabolite name for AACE set to AACE
Reaction name for IPRO3 not specified, usign id
Warning: Metabolite ACT not in model - added to the model
Warning: Metabolite name for ACT set to ACT
Reaction name for IPRO4 not specified, usign id
Warning: Metabolite IPRO not in model - added to the model
Warning: Metabolite name for IPRO set to IPRO
Reaction name for IPROBUT1 not specified, usign id
Warning: Metabolite IPROBUT not in model - added to the model
Warning: Metabolite name for IPROBUT set to IPROBUT
Reaction name for EX_IPROBUT not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: BUTBUT
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
Reaction name for BUT1 not specified, usign id
Reaction name for BUT2 not specified, usign id
Reaction name for BUT3 not specified, usign id
Reaction name for BUT4 not specified, usign id
Reaction name for BUT5 not specified, usign id
Reaction name for BUT6 not specified, usign id
Reaction name for BUTBUT1 not specified, usign id
Warning: Metabolite BUTBUT not in model - added to the model
Warning: Metabolite name for BUTBUT set to BUTBUT
Reaction name for FEM4 not specified, usign id
Reaction name for EX_BUTBUT not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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Production network for: IBUTBUT
Heterologus metabolite info was not provided
Adding heterologus reactions and specifying fixed module reactions/genes...
parent model does not contain gene information
parent model does not contain gene information
Reaction name for BUT1 not specified, usign id
Reaction name for BUT2 not specified, usign id
Reaction name for BUT3 not specified, usign id
Reaction name for BUT4 not specified, usign id
Reaction name for IBUT1 not specified, usign id
Warning: Metabolite ACELAC not in model - added to the model
Warning: Metabolite name for ACELAC set to ACELAC
Reaction name for IBUT2 not specified, usign id
Warning: Metabolite DHIV not in model - added to the model
Warning: Metabolite name for DHIV set to DHIV
Reaction name for IBUT3 not specified, usign id
Warning: Metabolite OIV not in model - added to the model
Warning: Metabolite name for OIV set to OIV
Reaction name for IBUT4 not specified, usign id
Warning: Metabolite IBUTANAL not in model - added to the model
Warning: Metabolite name for IBUTANAL set to IBUTANAL
Reaction name for IBUT5 not specified, usign id
Warning: Metabolite IBUT not in model - added to the model
Warning: Metabolite name for IBUT set to IBUT
Reaction name for IBUTBUT1 not specified, usign id
Warning: Metabolite IBUTBUT not in model - added to the model
Warning: Metabolite name for IBUTBUT set to IBUTBUT
Reaction name for EX_IBUTBUT not specified, usign id
Model does not contain enough information to check mass and charge balance of heterologus reactions
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+ Finding candidate reactions and genes for deletion +
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Model does not contain subsystem information
Model lacks field metFormulas, carbon number criterion not used
Model does not contain GPR information
allow_transport_reaction_deletions was not specified
metabolite_transport_allowed information not provided
Calculating blocked reactions in all production networks with heterologus reactions(10/10)....
Calculating blocked reactions in all production networks for non-growth state with heterologus reactions(10/10)....
Calculating essential reactions...
Calculating fully correlated reaction sets...
Model does not contain gene related information
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+ Done +
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